The Physics Of Photosythesis
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The Physics of Photosynthesis

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The Nature of Light
Light behaves both as a wave phenomenon and as discrete particles of energy called photons. If we look at light as a wave
phenomenon, we can assign it a wavelength (the distance from one peak of the wave to the next) and an amplitude (the distance
the wave oscillates from its centerline). Different wavelengths of light have different characteristic energies and properties. Light
can also travel at various speeds in different media, producing a frequency at which the wave travels. The energy contained in a
wave of light is related to its frequency.


Where E is energy, h is Planck's constant Energy = (6.626196 * 10^-34 Joule-seconds), and c is the speed of light. Short
wavelengths have high energies and long wavelengths have lower energies.


Pigments
How is light captured by living things? Molecules, when struck by a wave or photon of light, reflect some of its energy back out, or it
can absorb the energy, and thus enter into a higher energy or excited state. Each molecule absorbs or reflects its own
characteristic wavelengths of light. Molecules that have evolved to absorb wavelengths in the visible region of the spectrum very
well are called pigments.

Absorption and Action Spectra
An absorption spectrum for a particular pigment describes the wavelengths at which it can absorb light and enter into an excited
state. The following diagram represents the absorption spectrum of pure chlorophylls in solution:


An action spectrum, on the other hand, describes the efficiency of a particular molecule at acheiving its purpose in absorbing
light; this measurement shows what wavelengths of light the molecule can trap to conduct photosynthesis. And action spectrum
closely follows an absorption spectrum for a particular pigment because the molecule has to be able to absorb light to enter into
its excited state and pass the energy along.


Chlorophylls and the Accessory Pigments
The two primary pigments involved in photosynthesis are chlorophyll a and chlorophyll b. These two molecules efficiently absorb
light at the red and blue ends of the spectrum when purified and in solution, and not very efficiently in between (though this may
not completely accurately reflect the situation in living cells). Photosynthesis has optimized its light-absorbing capabilities by
making a series of pigments, covering more of the visible spectrum. These accessory pigments act as antennae to channel the
energy they absorb into the reaction center. A molecule of chlorophyll at the reaction center can then transfer its excited state into
biosynthetically useful energy.
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Photosynthesis is a physiological phenomenon that converts solar energy into
photochemical energy. This physiological phenomenon may be described
thermodynamically in terms of changes in energy, entropy and free energy. The
energetics of photosynthesis, driven by light, causes a change in entropy that in turn
yields a usable source of energy for the plant.

The following chemical equation summarizes the products and reactants of carbon
reduction in the typical green photosynthesizing plant:

CO2 + H2O → O2 + (CH2O) + 112 kcal/mol
On earth, there are two sources of free energy: light energy from the sun, and
terrestrial sources, including volcanoes, hot springs and radioactivity of certain
elements. The biochemical value of electromagnetic radiation has led plants to use
the free energy from the sun in particular. Visible light, which is used specifically by
green plants to photosynthesize, may result in the formation of electronically excited
states of certain substances called pigments (Gregory). For example, Chlorophyll a is
a pigment which acts as a catalyst, converting solar energy into photochemical energy
that is necessary for photosynthesis (Govindjee).
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Artificial photosynthesis is a man-made
process that attempts to replicate the natural
process of photosynthesis, converting sunlight
and carbon dioxide into carbohydrates and
oxygen.

It has been suggested that such a process
replicated on an industrial scale could help to
counter global warming. It also has the
potential to produce electricity in an
environmentally clean manner and more
effectively than solar panels
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    Enzyme:
    An enzyme is a macromolecule that catalyzes, or speeds up, a chemical reaction. Most enzymes are proteins and the word
    "enzyme" is often used to mean a protein enzyme, but some RNA molecules also have catalytic activity, and to differentiate them
    from protein enzymes, they are referred to as RNA enzymes or ribozymes. The word comes from the Greek ένζυμο, énsymo, which
    comes from én ("at" or "in") and simo ("leaven" or "yeast").

    Enzymes are essential to sustain life because most chemical reactions in biological cells would occur too slowly, or would lead to
    different products without enzymes. A malfunction (mutation, overproduction, underproduction or deletion) of a single critical
    enzyme can lead to a severe disease. For example, the most common type of phenylketonuria is caused by a single amino acid
    mutation in the enzyme phenylalanine hydroxylase, which catalyzes the first step in the degradation of phenylalanine. The resulting
    build-up of phenylalanine and related products can lead to mental retardation if the disease is untreated.

    Like all catalysts, enzymes work by providing an alternate pathway of lower activation energy of a reaction, thus allowing the reaction
    to proceed much faster. Enzymes may speed up reactions by a factor of many millions. An enzyme, like any catalyst, remains
    unaltered by the completed reaction and can therefore continue to function. Because enzymes do not affect the relative energy
    between the products and reagents, they do not affect equilibrium of a reaction. However, the advantage of enzymes compared to
    most other catalysts is their stereo-, regio- and chemoselectivity and specificity.

    Enzyme activity can be affected by other molecules. Inhibitors are naturally occurring or synthetic molecules that decrease or
    abolish enzyme activity; activators are molecules that increase activity. Some irreversible inhibitors bind enzymes very tightly,
    effectively inactivating them. Many drugs and poisons act by inhibiting enzymes. Aspirin inhibits the COX-1 and COX-2 enzymes that
    produce the inflammation messenger prostaglandin, thus suppressing pain and inflammation. The poison cyanide inhibits
    cytochrome c oxidase, which effectively blocks cellular respiration.

    While all enzymes have a biological role, some enzymes are used commercially for other purposes. Many household cleaners use
    enzymes to speed up chemical reactions ( e.g., breaking down protein or starch stains in clothes).

    More than 5,000 enzymes are known. Typically the suffix -ase is added to the name of the substrate (e.g., lactase is the enzyme that
    catalyzes the cleavage of lactose) or the type of reaction (e.g., DNA polymerase catalyzes the formation of DNA polymers). However,
    this is not always the case, especially when enzymes modify multiple substrates. For this reason Enzyme Commission or EC
    numbers are used to classify enzymes based on the reactions they catalyze. Even this is not a perfect solution, as enzymes from
    different species or even very similar enzymes in the same species may have identical EC numbers.
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Cyanobacteria:
Cyanobacteria (Greek: κυανοs = blue) are a phylum of bacteria that obtain their energy through photosynthesis. They are often referred
to as blue-green algae, even though it is now known that they are not algae. Nonetheless, the description is still sometimes used to
reflect their appearance and ecological role. Fossil traces of cyanobacteria have been found from around 3.8 billion years ago. As soon
as they evolved, they became the dominant metabolism for producing fixed carbon in the form of sugars from carbon dioxide.
Cyanobacteria are now one of the largest and most important groups of bacteria on earth.
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